Bern Monari, PhD
Tagline:Microbiology educator and enthusiast, studying human and environmental microbiomes using next-generation sequencing technologies
Baltimore, MD, USA
About Me
My educational philosophy revolves around student-centered, evidence-driven teaching practices, with a special interest in applying Course-based Undergraduate Research Experiences (CUREs) to improve student engagement and concept mastery. I previously served as an Adjunct Instructor at Stevenson University (Owings Mills, MD) and Loyola University Maryland (Baltimore, MD), where I enjoyed sharing my passion for science with the next generation of researchers, health professionals, and leaders. I am excited to progress in my career as a Visiting Lecturer at Stevenson University, with the intent of making introductory biology and genetics coursework accessible and interesting to my students!
My research interests broadly revolve around the use of next-generation sequencing technologies (primarily Illumina and Oxford Nanopore Technologies) to understand the complex community interactions of organisms found in specific ecosystems. I recently completed my PhD in Molecular Medicine, Genome Biology track, from the University of Maryland, Baltimore, where my dissertation research focused on understanding host-microbe interactions in the human vaginal microenvironment during gender-affirming testosterone treatment. My current research focuses on evaluating communities of prokaryotes in the Chesapeake Bay (Ocean Research Project) and communities of primarily marine invertebrates living on acrylic discs in the Baltimore Inner Harbor (MD-CRAB), using 16S and 18S rRNA gene sequencing.
Education
MS, Clinical Research and Epidemiology
from: 2019, until: 2020Field of study:Clinical Research and EpidemiologySchool:University of Maryland, BaltimoreLocation:Baltimore, MD
DescriptionOne-year, 30 credit master’s program, focusing on translational and clinical research. Done concurrently with Ph.D. in Molecular Medicine. Mentored by Dr. Rebecca Nowak.
PhD, Molecular Medicine
from: 2018, until: 2025Field of study:Molecular Medicine, Genome Biology trackSchool:University of Maryland, BaltimoreLocation:Baltimore, MD
DescriptionPhD in Molecular Medicine, focused in Genome Biology, at the University of Maryland, Baltimore.
I conducted my thesis research in the laboratory of Dr. Ravel, focusing on the genital microbiota of transgender populations and the impact of trans-specific care on host response.
Advanced to candidacy 4/23/2021.
Defended doctoral dissertation 4/28/2025.
Activities and societies: University of Maryland Baltimore (UMB) Institute for Clinical and Translational Research (ICTR) TL1 Pre-Doctoral Clinical Research Scholar; Queer Student Alliance (QSA) (Founding president)Activities and societies: University of Maryland Baltimore (UMB) Institute for Clinical and Translational Research (ICTR) TL1 Pre-Doctoral Clinical Research Scholar; Queer Student Alliance (QSA) (Founding president)
BS, Biology (general) and BS, Chemistry (general)
from: 2014, until: 2018Field of study:Biology and ChemistrySchool:Immaculata UniversityLocation:Malvern, PA
Publications
The vaginal microbiota, symptoms, and local immune correlates in transmasculine individuals using sustained testosterone therapy
Journal ArticlePublisher:Cell ReportsDate:2025Authors:Bern MonariHannah WilcoxPriscilla HaywoodPawel GajerJorge Rojas-VargasDavid ZuanazziLindsay RuttAinslie ShouldiceReeya ParmarL Elaine WaetjenYonah KrakowskyEmery PotterJessica L ProdgerJacques RavelDescription:Transmasculine individuals (assigned female at birth, masculine gender identity, TM) may use gender-affirming testosterone therapy, and some report adverse genital symptoms during treatment. In cis women, the vaginal microbiota is central to reproductive and sexual health. Lactobacillus-dominant communities are considered optimal, while diverse, Lactobacillus-depleted microbiota are non-optimal. Prior studies suggest Lactobacillus deficiency in TM vaginal microbiota, but associations with symptoms and immune markers remain unclear. We launched the TransBiota study to characterize the TM vaginal microbiota, soluble mediators of local inflammation, and self-reported symptoms over three weeks. Fewer than 10% of TM possess Lactobacillus-dominant microbiota, and most exhibit diverse, Lactobacillus-depleted microbiota. We identify 11 vaginal microbiota community state types (tmCSTs), with Lactobacillus-dominant tmCSTs unexpectedly linked to abnormal odor and elevated interleukin-1α. However, Lactobacillus dominance is not associated with other key symptoms, such as dyspareunia and vaginal dryness, underscoring that microbiome-symptom relationships in TM are more complex and warrant further research.
The neovaginal microbiota, symptoms, and local immune correlates in transfeminine individuals with penile inversion vaginoplasty
Journal ArticlePublisher:Cell ReportsDate:2025Authors:Jorge Rojas-VargasHannah WilcoxBern MonariPawel GajerDavid ZuanazziAinslie ShouldiceReeya ParmarPriscilla HaywoodVera TaiYonah KrakowskyEmery PotterJacques RavelJessica L ProdgerDescription:Transfeminine people (assigned male at birth) often undergo penile inversion vaginoplasty to create vulva, a clitoris and a vaginal canal (referred to as a neovagina). After vaginoplasty, transfeminine people frequently experience gynecological concerns, but their etiology is unknown due to a lack of knowledge of the neovaginal microenvironment. We characterized neovaginal microbiota and cytokines in 47 transfeminine participants. Participants self-reported sexual behaviors and symptoms, enabling correlation with bacterial (16S rRNA) and immune profiles. Four distinct clusters of co-occurring bacteria with unique immune profiles were identified. One cluster, which included Fastidiosipila, Ezakiella, and Murdochiella, was abundant, stable, and correlated with lower cytokines. Conversely, another cluster containing Howardella, Parvimonas, Fusobacterium, and Lawsonella was linked to higher cytokines. Although Lactobacillus was detected, Lactobacillus dominance was rare. These findings underscore the need for evidence-based clinical guidelines tailored to transfeminine gynecologic care, emphasizing the vital role of the neovaginal microbiome in symptom management and sexual health.
The Effect of Gender-Affirming Medical Care on the Vaginal and Neovaginal Microbiomes of Transgender and Gender-Diverse People
Journal ArticlePublisher:Frontiers in Cellular and Infection MicrobiologyDate:2022Authors:Yonah KrakowskyEmery PotterJason HallarnBern MonariHannah WilcoxGreta BauerJacques RavelJessica L ProdgerDescription:Transgender and gender diverse individuals may seek gender-affirming medical care, such as hormone therapy or surgery, to produce primary and/or secondary sex characteristics that are more congruent with their gender. Gender-affirming medical care for transmasculine individuals can include testosterone therapy, which suppresses circulating estrogen and can lead to changes in the vaginal epithelium that are reminiscent of the post-menopausal period in cisgender females. Among transfeminine individuals, gender-affirming medical care can include vaginoplasty, which is the surgical creation of a vulva and neovaginal canal, commonly using penile and scrotal skin. The effect of gender-affirming medical care on the vagina of transmasculine individuals and on the neovagina of transfeminine individuals is poorly characterized. This review summarizes what is known of the epithelium and local microbiota of the testosterone-exposed vagina and the neovagina. We focus on potential pathogens and determinants of gynecological health and identify key knowledge gaps for future research.
Supervisions
- SP
Sydney Purcell, Hannah Goodrich, Fernanda Gonzalez, Miles Sharrett
Summer 2025 Interns
date: 2025 - 2025Department: Baltimore Underground Science Space .